Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs77447765 chr12:56690662 G/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs7745632 chr6:26567442 T/C 7.54E-7 176 10.68 35.32 24.52 KM Plot
PCPG rs77522907 chr16:90024447 T/C 1.26E-8 172 25.67 20.2 6.62 KM Plot
PCPG rs7754998 chr6:131711382 C/G 7.3E-6 174 15.33 28.3 24.7 KM Plot
PCPG rs77568099 chr16:86460651 A/C 0 174 25.4 30.18 3.17 KM Plot
PCPG rs77571847 chr8:121477058 T/C 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs77588533 chr5:171531164 T/C 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs7760655 chr6:150406493 C/T 3.96E-7 178 2.5 24.7 25.87 KM Plot
PCPG rs77632445 chr16:90083021 G/A 1.14E-8 174 25.87 20.2 6.62 KM Plot
PCPG rs77637295 chr17:1441756 C/G 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs77674256 chr7:33700132 G/A 1.12E-7 177 25.28 25.43 19.87 KM Plot
PCPG rs7768957 chr6:122594090 C/A 5.97E-6 174 27.3 23.43 19.87 KM Plot
PCPG rs77692353 chr16:56417805 T/C 0 178 25.4 28.2 3.17 KM Plot
PCPG rs77699179 chr12:124092437 G/A 4.04E-5 177 25.87 19.87 20.13 KM Plot
PCPG rs77712395 chr16:71584527 TA/T 1.16E-7 170 24.47 30.93 19.87 KM Plot